Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4289

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12656 and 12657 are separated by 343 nucleotides12657 and 12658 are separated by 225 nucleotides mRNA_4288: 12656 - Hypothetical Protein, at 1,811,601 to 1,812,350 12656 mRNA_4289: 12657 - K15445 TRMT10A, TRM10, RG9MTD2 tRNA (guanine9-N1)-methyltransferase, at 1,812,694 to 1,814,089 12657 mRNA_4290: 12658 - Hypothetical Protein, at 1,814,315 to 1,814,636 12658

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,811,975 - 12656 mRNA_4288 0.50 +0.0
1,812,022 + 12656 mRNA_4288 0.56 -1.2
1,812,096 + 12656 mRNA_4288 0.66 -1.8
1,812,267 - 12656 mRNA_4288 0.89 -2.3
1,812,425 + -1.3
1,812,544 - -0.4
1,812,545 - +1.1
1,812,548 + +0.3
1,812,570 + -0.4
1,812,578 + +1.2
1,812,613 - -1.5
1,812,614 + +0.0
1,812,616 - -2.8
1,812,616 - -1.6
1,812,704 - -0.7
1,813,132 - 12657 mRNA_4289 0.31 -0.9
1,813,164 + 12657 mRNA_4289 0.34 -2.6
1,813,591 + 12657 mRNA_4289 0.64 -2.1
1,813,716 - 12657 mRNA_4289 0.73 -0.5
1,813,734 - 12657 mRNA_4289 0.74 +0.3
1,813,895 + 12657 mRNA_4289 0.86 -1.3
1,813,908 + 12657 mRNA_4289 0.87 +2.0
1,814,200 - +0.3
1,814,266 - +0.7
1,814,347 - +1.9
1,814,457 + 12658 mRNA_4290 0.44 +1.8
1,814,726 - +0.8
1,814,741 + -1.9
1,814,850 - -0.8
1,814,887 + -2.7
1,814,917 + -0.9
1,815,019 + -0.4

Or see this region's nucleotide sequence