Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4300

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12667 and 12668 are separated by 268 nucleotides mRNA_4299: 12667 - K12617 PATL1, PAT1 DNA topoisomerase 2-associated protein PAT1, at 1,832,408 to 1,835,999 12667 mRNA_4300: 12668 - K08257 E3.2.1.101 mannan endo-1,6-alpha-mannosidase, at 1,836,268 to 1,838,617 12668

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
1,836,000 + +0.6
1,836,164 + +0.7
1,836,171 + +0.1
1,836,183 + -1.7
1,836,185 - +0.3
1,836,188 + -0.4
1,836,189 + -0.2
1,836,222 + -0.8
1,836,730 + 12668 mRNA_4300 0.20 -1.0
1,836,958 - 12668 mRNA_4300 0.29 +0.4
1,837,073 + 12668 mRNA_4300 0.34 -0.2
1,837,788 + 12668 mRNA_4300 0.65 +0.2
1,838,107 + 12668 mRNA_4300 0.78 +0.6
1,838,808 - -1.6
1,838,818 + -1.1
1,838,835 + +0.7
1,838,919 + -2.8
1,839,019 + +1.0

Or see this region's nucleotide sequence