Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4309

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12676 and 12677 are separated by 428 nucleotides mRNA_4308: 12676 - HMMPfam-Nucleotide-diphospho-sugar transferase-PF03407, at 1,863,186 to 1,865,063 12676 mRNA_4309: 12677 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 1,865,492 to 1,868,533 12677

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
1,864,946 + -0.7
1,864,963 + +0.6
1,865,082 + -0.7
1,865,088 - +0.6
1,865,092 - -0.2
1,865,093 - +0.2
1,865,096 - -0.5
1,865,109 + -1.2
1,865,109 - +0.4
1,865,110 + -1.0
1,865,111 + +0.2
1,865,130 - +0.5
1,865,150 + -2.0
1,865,150 - -2.0
1,865,151 + +0.4
1,865,158 - -1.1
1,865,160 + +1.1
1,865,193 + +0.3
1,865,195 - -2.5
1,865,201 + +0.4
1,865,201 + +0.2
1,865,205 + +1.4
1,865,221 + -0.3
1,865,230 - +1.2
1,865,231 + -0.8
1,865,335 - -0.6
1,865,340 - -1.6
1,865,363 - -0.5
1,865,364 + -0.1
1,865,509 - +1.2
1,866,083 + 12677 mRNA_4309 0.19 -0.6
1,866,371 - 12677 mRNA_4309 0.29 +0.1
1,866,380 + 12677 mRNA_4309 0.29 +0.8
1,866,639 - 12677 mRNA_4309 0.38 -0.4
1,866,644 - 12677 mRNA_4309 0.38 +0.4
1,866,699 + 12677 mRNA_4309 0.40 -1.0
1,866,815 - 12677 mRNA_4309 0.43 -2.0
1,867,129 + 12677 mRNA_4309 0.54 +0.5
1,867,236 - 12677 mRNA_4309 0.57 -1.0
1,867,383 + 12677 mRNA_4309 0.62 -0.3
1,867,417 - 12677 mRNA_4309 0.63 -0.7
1,867,698 + 12677 mRNA_4309 0.73 +2.2
1,867,706 - 12677 mRNA_4309 0.73 +0.2
1,867,710 - 12677 mRNA_4309 0.73 -0.5
1,867,728 + 12677 mRNA_4309 0.74 +1.1
1,868,133 + 12677 mRNA_4309 0.87 -0.7
1,868,133 + 12677 mRNA_4309 0.87 +0.2
1,868,410 + -0.2
1,868,624 - -0.0
1,869,043 - -1.0
1,869,141 - +0.3
1,869,141 - -1.2
1,869,311 - +0.5
1,869,476 + -0.4

Or see this region's nucleotide sequence