Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4328

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12695 and 12696 are separated by 266 nucleotides12696 and 12697 are separated by 677 nucleotides mRNA_4327: 12695 - K18754 LIN28 protein lin-28, at 1,916,431 to 1,918,530 12695 mRNA_4328: 12696 - HMMPfam-F-box domain-PF00646,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF81383, at 1,918,797 to 1,920,453 12696 mRNA_4329: 12697 - KOG1802 RNA helicase nonsense mRNA reducing factor (pNORF1), at 1,921,131 to 1,925,118 12697

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,917,809 - 12695 mRNA_4327 0.66 -1.4
1,917,987 + 12695 mRNA_4327 0.74 -0.5
1,918,155 - 12695 mRNA_4327 0.82 +1.0
1,918,303 + 12695 mRNA_4327 0.89 -0.2
1,919,038 - 12696 mRNA_4328 0.15 -1.8
1,919,532 + 12696 mRNA_4328 0.44 -3.5
1,920,024 - 12696 mRNA_4328 0.74 -0.4
1,920,458 - -1.5
1,920,470 - +0.6
1,920,488 + -0.4
1,920,491 - -0.0
1,920,609 - +2.2
1,920,614 + +1.4
1,920,616 + +0.5
1,920,637 - -0.3
1,920,646 - +0.4
1,920,781 + -0.5
1,920,924 + +0.7
1,920,928 - -0.5

Or see this region's nucleotide sequence