Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4382

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12749 and 12750 are separated by 343 nucleotides12750 and 12751 are separated by 277 nucleotides mRNA_4381: 12749 - BLAST glycosyltransferase family 25 [Puccinia cf. psidii AE..., at 59,708 to 61,504 12749 mRNA_4382: 12750 - Hypothetical Protein, at 61,848 to 63,283 12750 mRNA_4383: 12751 - Hypothetical Protein, at 63,561 to 65,177 12751

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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60,879 + 12749 mRNA_4381 0.65 +0.5
61,044 + 12749 mRNA_4381 0.74 -0.6
61,057 - 12749 mRNA_4381 0.75 -2.6
61,173 + 12749 mRNA_4381 0.82 -0.3
61,200 - 12749 mRNA_4381 0.83 -0.8
61,299 - 12749 mRNA_4381 0.89 -0.3
61,304 - 12749 mRNA_4381 0.89 -1.1
61,603 + -2.8
61,629 - -1.3
61,633 - +1.3
62,159 - 12750 mRNA_4382 0.22 +1.1
62,785 - 12750 mRNA_4382 0.65 -0.1
62,792 + 12750 mRNA_4382 0.66 -1.8
63,062 + 12750 mRNA_4382 0.85 +0.0
63,066 - 12750 mRNA_4382 0.85 -0.8
63,067 + 12750 mRNA_4382 0.85 +0.3
63,071 - 12750 mRNA_4382 0.85 +0.4
63,130 - 12750 mRNA_4382 0.89 +0.8
63,207 - +0.7
63,354 + -0.1
63,394 - -0.2
63,394 - -1.1
63,498 - +0.8
63,510 - -2.9
63,516 + -2.4
63,516 + -1.6
63,531 + +0.5
63,953 + 12751 mRNA_4383 0.24 -1.8

Or see this region's nucleotide sequence