Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4385

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12752 and 12753 are separated by 96 nucleotides12753 and 12754 are separated by 602 nucleotides mRNA_4384: 12752 - K00232 E1.3.3.6, ACOX1, ACOX3 acyl-CoA oxidase, at 65,499 to 68,176 12752 mRNA_4385: 12753 - HMMPfam-Polysaccharide deacetylase-PF01522,ProSiteProfiles-NodB homology domain profile.-PS51677,SUPERFAMILY--SSF88713, at 68,273 to 69,417 12753 mRNA_4386: 12754 - BLAST polysaccharide lyase family 14 protein [Hypholoma sub..., at 70,020 to 71,335 12754

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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67,280 - 12752 mRNA_4384 0.67 +0.9
67,638 - 12752 mRNA_4384 0.80 +1.6
67,885 - 12752 mRNA_4384 0.89 -0.2
67,887 - 12752 mRNA_4384 0.89 -1.3
67,920 - -0.2
68,005 + -2.6
68,016 + +1.0
68,017 + +0.1
68,086 - -0.8
68,087 - +0.2
68,090 - -1.2
68,099 + -0.3
68,109 - -0.5
68,216 + +1.5
68,241 - +0.1
68,338 + -3.1
68,503 + 12753 mRNA_4385 0.20 -1.7
68,536 + 12753 mRNA_4385 0.23 -2.2
68,648 - 12753 mRNA_4385 0.33 +0.3
68,731 - 12753 mRNA_4385 0.40 +0.2
68,772 + 12753 mRNA_4385 0.44 +0.2
69,019 - 12753 mRNA_4385 0.65 +0.3
69,022 - 12753 mRNA_4385 0.65 +0.8
69,030 + 12753 mRNA_4385 0.66 +1.8
69,331 - -3.0
69,361 + +0.1
69,372 - +0.4
69,431 - +0.4
69,483 + +0.1
69,513 - +0.2
69,526 - +0.5
69,563 + +1.5
69,621 + -3.7
69,710 + -1.0
70,023 + +0.7

Or see this region's nucleotide sequence