Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4393

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12760 and 12761 are separated by 892 nucleotides12761 and 12762 are separated by 201 nucleotides mRNA_4392: 12760 - KOG3069 Peroxisomal NUDIX hydrolase, at 80,185 to 81,389 12760 mRNA_4393: 12761 - K00029 E1.1.1.40, maeB malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+), at 82,282 to 84,844 12761 mRNA_4394: 12762 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 85,046 to 87,560 12762

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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81,342 - +1.2
81,354 - -1.8
81,367 + -0.2
81,483 + -0.1
81,504 + +1.6
81,516 + +1.3
81,524 + +1.5
81,542 - +0.3
81,646 - -1.8
81,650 - -0.4
81,655 + -5.1
81,658 - -0.3
81,661 + -0.6
81,674 - -1.0
81,699 - +0.7
81,701 - -0.0
81,701 - +0.8
81,706 + +0.3
81,709 - +0.1
81,709 - -2.7
81,710 + +1.0
81,710 + -0.6
81,716 + -0.7
81,716 + +0.5
81,727 - +0.3
81,741 + +0.1
81,759 + +0.3
81,760 - -2.2
81,760 - -0.2
81,761 - -2.0
81,762 - -0.7
81,769 - -2.0
81,773 - +1.1
81,778 - -0.3
81,784 + -0.3
81,795 - +0.2
81,849 + +1.4
81,869 + -0.3
81,886 - -0.0
81,896 - -0.1
81,898 + +0.3
81,900 - -2.4
81,911 - -0.5
81,913 - -1.0
81,924 + -0.6
81,929 + +1.2
82,077 + +0.3
82,079 + +2.8
82,079 + +0.7
82,087 + -1.0
82,096 + +0.1
82,236 - +0.2
82,243 - +0.9
82,380 - -0.3
82,401 + -1.1
82,518 - +0.0
82,523 + +0.1
82,525 - +0.8
82,535 + +0.7
82,537 + -1.3
82,685 + 12761 mRNA_4393 0.16 -2.0
82,840 + 12761 mRNA_4393 0.22 -0.9
82,982 + 12761 mRNA_4393 0.27 -1.8
83,288 - 12761 mRNA_4393 0.39 +1.2
83,587 - 12761 mRNA_4393 0.51 -0.9
83,730 + 12761 mRNA_4393 0.56 +0.7
83,786 - 12761 mRNA_4393 0.59 +2.2
84,272 - 12761 mRNA_4393 0.78 -1.1
84,523 + 12761 mRNA_4393 0.87 -0.7
84,662 + -0.9
84,830 - +1.7
84,946 - +0.0

Or see this region's nucleotide sequence