Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4450

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12817 and 12818 are separated by 186 nucleotides12818 and 12819 are separated by 989 nucleotides mRNA_4449: 12817 - K14168 CTU1, NCS6 cytoplasmic tRNA 2-thiolation protein 1, at 210,344 to 212,336 12817 mRNA_4450: 12818 - Hypothetical Protein, at 212,523 to 213,518 12818 mRNA_4451: 12819 - K03355 APC8, CDC23 anaphase-promoting complex subunit 8, at 214,508 to 216,794 12819

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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211,898 - 12817 mRNA_4449 0.78 +0.4
211,916 - 12817 mRNA_4449 0.79 +1.4
212,084 + 12817 mRNA_4449 0.87 +1.5
212,153 + +1.8
212,172 - +1.4
212,277 - +2.2
212,780 - 12818 mRNA_4450 0.26 +1.9
213,203 + 12818 mRNA_4450 0.68 +0.5
213,206 + 12818 mRNA_4450 0.69 -0.2
213,216 - 12818 mRNA_4450 0.70 -1.4
213,505 + +1.2
213,516 - -1.7
213,612 + +1.1
213,641 + -1.5
213,647 + -2.9
213,649 + +0.7
213,680 + -1.9
213,778 + -1.0
213,781 - +0.5
213,794 - -0.2
213,806 + +0.3
213,810 - -1.2
213,813 - -1.8
213,813 + +1.1
213,937 - +2.6
213,944 + +0.8
213,961 + +0.2
213,969 + +0.4

Or see this region's nucleotide sequence