Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4461

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12828 and 12829 are separated by 368 nucleotides mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720 12828 mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239,089 to 240,569 12829

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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238,316 + 12828 mRNA_4460 0.63 +0.5
238,562 - 12828 mRNA_4460 0.86 -0.3
238,635 - +0.0
238,984 - +0.4
239,005 + -1.0
239,151 + +0.4
239,170 + -0.3
239,436 - 12829 mRNA_4461 0.23 -0.3
239,654 - 12829 mRNA_4461 0.38 +0.8
239,807 - 12829 mRNA_4461 0.48 +3.4
239,855 + 12829 mRNA_4461 0.52 -0.8
239,891 + 12829 mRNA_4461 0.54 -1.8
240,124 - 12829 mRNA_4461 0.70 +1.0
240,127 + 12829 mRNA_4461 0.70 +0.1
240,149 - 12829 mRNA_4461 0.72 +0.4
240,265 + 12829 mRNA_4461 0.79 -2.2
240,280 - 12829 mRNA_4461 0.80 -0.2
240,308 + 12829 mRNA_4461 0.82 +2.2
240,431 - +0.1
240,447 + -1.6
240,464 - -0.7
240,475 + -1.2
240,873 - -0.2
240,874 - -1.1
240,877 - -1.3
241,210 + -0.3
241,363 + -1.0
241,433 - -0.6
241,475 - -0.2

Or see this region's nucleotide sequence