Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4510

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12877 and 12878 are separated by 689 nucleotides mRNA_4509: 12877 - HMMPfam-Ctr copper transporter family-PF04145, at 345,259 to 347,501 12877 mRNA_4510: 12878 - KOG0627 Heat shock transcription factor, at 348,191 to 349,956 12878

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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347,377 - -1.6
347,686 - -1.5
347,813 - -2.3
347,976 - +0.0
348,130 - +0.4
348,312 - +1.3
348,418 + 12878 mRNA_4510 0.13 -2.5
348,789 + 12878 mRNA_4510 0.34 -1.7
348,978 - 12878 mRNA_4510 0.45 +0.1
349,135 + 12878 mRNA_4510 0.53 -1.2
349,271 - 12878 mRNA_4510 0.61 -0.3
349,413 + 12878 mRNA_4510 0.69 +0.3
349,691 - 12878 mRNA_4510 0.85 -0.0
349,864 + -0.7
349,957 + -1.2
349,980 - -1.6
349,990 + +0.1
349,995 - -2.7
350,011 + -0.6
350,031 - +0.0
350,077 - +0.6
350,133 + +0.3
350,143 - -2.2
350,159 + -1.2
350,177 + -0.8
350,178 - -3.0
350,183 + -0.7
350,191 + -0.7
350,211 + -2.6
350,329 - -2.5
350,449 + -0.5
350,457 + -1.1
350,479 - +0.6
350,484 + -0.9
350,586 - -2.2
350,603 + -0.8
350,650 - -0.5
350,797 + -0.3
350,800 - -1.5
350,803 + +0.2
350,817 + -0.4
350,817 + -2.0
350,921 - -1.0
350,941 - -0.2
350,947 + -1.6
350,948 - -1.4

Or see this region's nucleotide sequence