Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4528

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12895 and 12896 are separated by 509 nucleotides12896 and 12897 are separated by 801 nucleotides mRNA_4527: 12895 - SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 384,813 to 386,229 12895 mRNA_4528: 12896 - Hypothetical Protein, at 386,739 to 388,320 12896 mRNA_4529: 12897 - HMMPfam-Galactose oxidase, central domain-PF13418,SUPERFAMILY--SSF117281, at 389,122 to 390,984 12897

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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385,781 + 12895 mRNA_4527 0.68 +0.3
385,865 - 12895 mRNA_4527 0.74 +0.9
386,685 - -3.3
387,006 + 12896 mRNA_4528 0.17 +0.6
387,226 - 12896 mRNA_4528 0.31 -0.2
387,849 - 12896 mRNA_4528 0.70 -3.0
388,079 + 12896 mRNA_4528 0.85 -0.4
388,235 - +0.2
388,420 + +2.7
388,449 + -0.8
388,556 - +1.3
388,561 + -0.1
388,571 + -1.6
388,571 + -1.5
388,574 - -0.1
388,590 - +0.6
388,593 - +0.2
388,732 + -0.5
389,149 + +1.2
389,179 - +0.1
389,181 + -0.1

Or see this region's nucleotide sequence