Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4563

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12930 and 12931 are separated by 551 nucleotides12931 and 12932 are separated by 675 nucleotides mRNA_4562: 12930 - K11366 USP22_27_51, UBP8 ubiquitin carboxyl-terminal hydrolase 22/27/51, at 466,499 to 468,748 12930 mRNA_4563: 12931 - KOG1601 GATA-4/5/6 transcription factors, at 469,300 to 472,637 12931 mRNA_4564: 12932 - K11844 USP16_45 ubiquitin carboxyl-terminal hydrolase 16/45, at 473,313 to 477,203 12932

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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468,511 + 12930 mRNA_4562 0.89 -0.9
468,546 - +0.5
468,565 + -0.0
468,592 - -2.6
468,874 - -1.2
469,604 - -0.4
470,580 - 12931 mRNA_4563 0.38 +0.1
470,596 - 12931 mRNA_4563 0.39 -0.9
470,712 - 12931 mRNA_4563 0.42 -0.0
470,721 + 12931 mRNA_4563 0.43 -1.6
472,447 + -0.4
472,696 - +1.4
472,715 + -0.9
472,734 + +0.4
473,019 + -0.1
473,020 - -0.5
473,027 - -0.5
473,035 - -0.5
473,048 + -0.7
473,057 - -0.2
473,149 + -1.9
473,157 + +0.2
473,172 + -0.4
473,174 + +0.6
473,175 - +0.4
473,176 + +0.9
473,176 - -1.7
473,180 - -0.6
473,181 + +0.2
473,187 + -0.4
473,192 - +0.1
473,193 + -0.0
473,196 + -1.0
473,199 + -0.3
473,213 - +1.0
473,241 + +0.1
473,243 - -0.3
473,317 - -0.1
473,346 + +0.0
473,363 - -0.3
473,366 + +1.4
473,376 + -0.4
473,521 + +0.3

Or see this region's nucleotide sequence