Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4592

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12959 and 12960 are separated by 510 nucleotides12960 and 12961 are separated by 820 nucleotides mRNA_4591: 12959 - KOG0379 Kelch repeat-containing proteins, at 538,604 to 541,004 12959 mRNA_4592: 12960 - K11655 BAZ1A, ACF1 bromodomain adjacent to zinc finger domain protein 1A, at 541,515 to 545,296 12960 mRNA_4593: 12961 - K05286 PIGB phosphatidylinositol glycan, class B, at 546,117 to 548,213 12961

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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540,593 - 12959 mRNA_4591 0.83 -0.0
540,609 + 12959 mRNA_4591 0.84 +0.3
540,707 - 12959 mRNA_4591 0.88 -1.1
540,881 - -0.8
541,009 - +0.0
541,017 + -0.1
541,029 + -0.3
541,171 - +0.6
541,174 - -3.1
541,175 - -0.5
541,186 - +0.5
541,194 - +0.1
541,198 - +1.7
541,200 + +0.7
541,312 + -4.4
541,317 + -0.4
541,377 + -2.4
541,386 - +0.1
541,394 - -0.3
541,544 + -2.9
541,548 + -0.9
542,418 + 12960 mRNA_4592 0.24 -2.9
542,812 - 12960 mRNA_4592 0.34 -2.3
545,305 + -4.0
545,462 - -1.3
545,665 + -0.9
545,706 + -2.5
545,751 - -0.3
545,752 + -1.1
545,760 + +0.2
545,763 + +0.8
545,777 - -1.7
545,839 - -0.3
545,941 - -0.3
545,960 + -2.6
545,969 - -0.9
545,976 + -1.7
545,991 - -0.0
545,991 - +0.3
546,112 + -0.6

Or see this region's nucleotide sequence