Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4734

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13101 and 13102 are separated by 900 nucleotides13102 and 13103 are separated by 484 nucleotides mRNA_4733: 13101 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 881,363 to 882,284 13101 mRNA_4734: 13102 - Hypothetical Protein, at 883,185 to 884,845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885,330 to 888,560 13103

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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882,358 - +1.6
882,366 - -1.2
882,384 - -0.7
882,385 + -0.1
882,413 - -0.0
882,645 - -1.0
882,823 - -1.6
882,826 + -0.3
882,829 - +0.9
882,829 + -1.5
882,833 + +1.0
882,833 + +0.5
882,837 - -2.0
882,842 + +0.4
882,843 + +1.2
882,846 + +0.2
882,846 - -0.3
882,848 + -2.1
882,923 - +0.8
882,967 + +0.5
882,987 + -0.3
883,014 + -0.4
883,111 - -1.2
883,121 + -0.3
883,122 + -0.6
883,125 + -0.4
883,125 - +0.3
883,126 - -0.2
883,130 + -1.0
883,292 + +0.3
883,303 + -1.0
883,435 - 13102 mRNA_4734 0.15 +0.2
883,568 + 13102 mRNA_4734 0.23 +1.2
883,741 + 13102 mRNA_4734 0.33 -0.2
883,768 + 13102 mRNA_4734 0.35 +0.3
884,338 - 13102 mRNA_4734 0.69 +0.9
884,713 - +1.4
884,958 + +0.6
885,041 - -0.7
885,160 - +0.5
885,162 - -1.8
885,165 + -0.9
885,179 - -0.4
885,445 + -2.8
885,462 - +0.5
885,469 - +1.1
885,489 + +0.0
885,597 - -0.8
885,601 - -0.8
885,606 + +1.9
885,613 + -0.8
885,620 + -1.7
885,627 + -2.2
885,650 + -0.9
885,790 - 13103 mRNA_4735 0.14 -1.9
885,812 + 13103 mRNA_4735 0.15 -1.7

Or see this region's nucleotide sequence