Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4779

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13146 and 13147 are separated by 545 nucleotides13147 and 13148 are separated by 347 nucleotides mRNA_4778: 13146 - Hypothetical Protein, at 993,979 to 994,945 13146 mRNA_4779: 13147 - Hypothetical Protein, at 995,491 to 996,923 13147 mRNA_4780: 13148 - SUPERFAMILY--SSF52047, at 997,271 to 1,001,046 13148

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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994,700 - 13146 mRNA_4778 0.75 -0.8
994,709 + 13146 mRNA_4778 0.75 -0.8
994,753 + 13146 mRNA_4778 0.80 +0.5
994,827 + 13146 mRNA_4778 0.88 +1.0
994,833 - 13146 mRNA_4778 0.88 +1.2
994,844 + 13146 mRNA_4778 0.89 +0.5
994,863 + -1.0
995,020 + +0.3
995,147 - -0.3
995,411 - -0.2
996,921 + +0.2
997,187 + +0.9
997,516 + +0.2
997,828 - 13148 mRNA_4780 0.15 -0.8

Or see this region's nucleotide sequence