Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4803

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13170 and 13171 are separated by 347 nucleotides13171 and 13172 are separated by 285 nucleotides mRNA_4802: 13170 - K09313 CUTL homeobox protein cut-like, at 1,048,232 to 1,051,035 13170 mRNA_4803: 13171 - BLAST ribosomal protein Mrp49 [Schizosaccharomyces octo..., at 1,051,383 to 1,052,079 13171 mRNA_4804: 13172 - HMMPfam-PAP2 superfamily-PF01569, at 1,052,365 to 1,054,205 13172

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,050,593 + 13170 mRNA_4802 0.84 +0.4
1,050,649 + 13170 mRNA_4802 0.86 -3.2
1,050,861 - -0.1
1,050,974 + -0.9
1,051,109 - +0.6
1,051,125 - +0.9
1,051,153 + -0.5
1,051,286 + +0.5
1,052,178 - +0.4
1,052,201 + +0.3
1,052,439 - -0.1
1,052,878 - 13172 mRNA_4804 0.28 -2.6
1,053,033 + 13172 mRNA_4804 0.36 +0.8

Or see this region's nucleotide sequence