Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4814

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13181 and 13182 are separated by 230 nucleotides13182 and 13183 are separated by 51 nucleotides mRNA_4813: 13181 - Hypothetical Protein, at 1,073,710 to 1,074,508 13181 mRNA_4814: 13182 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,074,739 to 1,075,935 13182 mRNA_4815: 13183 - SUPERFAMILY--SSF143575, at 1,075,987 to 1,081,197 13183

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,073,943 + 13181 mRNA_4813 0.29 -0.1
1,074,173 - 13181 mRNA_4813 0.58 +0.7
1,074,627 - +0.1
1,074,776 - +1.0
1,074,776 - +1.9
1,074,790 + -0.1
1,074,793 - +0.6
1,074,929 - 13182 mRNA_4814 0.16 -1.9
1,074,948 - 13182 mRNA_4814 0.17 -1.4
1,074,993 - 13182 mRNA_4814 0.21 -0.2
1,075,091 - 13182 mRNA_4814 0.29 -0.9
1,075,115 - 13182 mRNA_4814 0.31 +0.8
1,075,118 + 13182 mRNA_4814 0.32 -1.1
1,075,350 + 13182 mRNA_4814 0.51 -0.5
1,075,520 + 13182 mRNA_4814 0.65 -1.9
1,075,522 + 13182 mRNA_4814 0.65 -0.0
1,075,819 - +0.4
1,076,023 + +0.5
1,076,055 - -0.5
1,076,130 + +0.2
1,076,356 - +0.6
1,076,483 + -2.2
1,076,675 + 13183 mRNA_4815 0.13 -0.7
1,076,804 + 13183 mRNA_4815 0.16 -0.8
1,076,827 - 13183 mRNA_4815 0.16 -0.4
1,076,901 + 13183 mRNA_4815 0.18 -0.6

Or see this region's nucleotide sequence