Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4841

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13208 and 13209 are separated by 148 nucleotides13209 and 13210 are separated by 183 nucleotides13210 and 13211 are separated by 154 nucleotides mRNA_4840: 13208 - KOG4526 Predicted membrane protein, at 1,121,858 to 1,122,709 13208 mRNA_4841: 13209 - HMMPfam-Anaphase-promoting complex subunit 5-PF12862, at 1,122,858 to 1,125,824 13209 mRNA_4842: 13210 - BLAST mitochondrial ribosomal protein subunit Mrp10 [Rh..., at 1,126,008 to 1,126,493 13210 mRNA_4843: 13211 - K14842 NSA2 ribosome biogenesis protein NSA2, at 1,126,648 to 1,127,896 13211

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,121,870 - -1.8
1,122,768 - +0.8
1,122,787 + +0.3
1,122,791 - -0.5
1,122,796 - -0.8
1,124,692 + 13209 mRNA_4841 0.62 -0.9
1,125,298 + 13209 mRNA_4841 0.82 +1.0
1,125,862 + +0.4
1,125,863 + +0.2
1,125,866 - +1.8
1,126,004 - -0.3
1,126,006 - -0.1
1,126,009 - +0.3
1,126,457 + -0.8

Or see this region's nucleotide sequence