Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4898

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13265 and 13266 are separated by 370 nucleotides13266 and 13267 are separated by 119 nucleotides mRNA_4897: 13265 - K01759 GLO1, gloA lactoylglutathione lyase, at 1,252,541 to 1,253,295 13265 mRNA_4898: 13266 - HMMPfam-TAP-like protein-PF08386,SUPERFAMILY--SSF53474, at 1,253,666 to 1,256,190 13266 mRNA_4899: 13267 - KOG4705 Uncharacterized conserved protein, at 1,256,310 to 1,257,849 13267

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,253,111 + 13265 mRNA_4897 0.75 -1.9
1,253,449 + -0.4
1,253,599 - +2.2
1,253,617 - -1.8
1,253,618 + +1.0
1,253,621 - +0.8
1,253,623 + -1.5
1,253,642 - -0.4
1,253,756 - +1.0
1,253,780 + -1.9
1,253,876 + -1.4
1,253,914 - -0.4
1,253,915 - +0.9
1,253,920 - 13266 mRNA_4898 0.10 -1.5
1,253,920 + 13266 mRNA_4898 0.10 +0.6
1,253,924 - 13266 mRNA_4898 0.10 -0.7
1,253,935 + 13266 mRNA_4898 0.11 -0.2
1,254,661 + 13266 mRNA_4898 0.39 +0.5
1,254,850 - 13266 mRNA_4898 0.47 -0.6
1,255,083 - 13266 mRNA_4898 0.56 +2.3
1,255,407 - 13266 mRNA_4898 0.69 -0.9
1,255,518 - 13266 mRNA_4898 0.73 +0.1
1,255,554 + 13266 mRNA_4898 0.75 -0.9
1,255,590 - 13266 mRNA_4898 0.76 -1.0
1,255,657 + 13266 mRNA_4898 0.79 +1.2
1,255,685 - 13266 mRNA_4898 0.80 +0.0
1,255,696 - 13266 mRNA_4898 0.80 -0.4
1,255,701 + 13266 mRNA_4898 0.81 +0.6
1,255,824 + 13266 mRNA_4898 0.85 -0.0
1,255,839 - 13266 mRNA_4898 0.86 +0.0
1,256,158 + +0.2
1,256,426 + -1.8

Or see this region's nucleotide sequence