Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5078

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13445 and 13446 are separated by 685 nucleotides13446 and 13447 are separated by 148 nucleotides mRNA_5077: 13445 - KOG1663 O-methyltransferase, at 1,692,035 to 1,693,349 13445 mRNA_5078: 13446 - K01870 IARS, ileS isoleucyl-tRNA synthetase, at 1,694,035 to 1,697,967 13446 mRNA_5079: 13447 - HMMPfam-TRAF-type zinc finger-PF02176,ProSiteProfiles-Zinc finger TRAF-type profile.-PS50145, at 1,698,116 to 1,699,686 13447

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,693,105 - 13445 mRNA_5077 0.81 -1.2
1,693,261 + +0.1
1,693,383 - +1.4
1,693,389 - -0.4
1,693,396 - -0.6
1,693,410 + +1.1
1,693,413 - +0.5
1,693,414 - -0.7
1,693,424 + -0.4
1,693,433 + -0.2
1,693,442 + +0.8
1,693,558 - +1.9
1,693,567 - +0.9
1,693,691 - +0.6
1,693,692 + -0.9
1,693,710 + +0.8
1,693,741 - +0.5
1,693,874 + -0.2
1,695,790 - 13446 mRNA_5078 0.45 -1.8
1,698,164 - -0.8
1,698,381 + 13447 mRNA_5079 0.17 -1.7

Or see this region's nucleotide sequence