Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5162

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13529 and 13530 are separated by 795 nucleotides mRNA_5161: 13529 - Hypothetical Protein, at 44,917 to 45,595 13529 mRNA_5162: 13530 - Hypothetical Protein, at 46,391 to 47,176 13530

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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45,413 - 13529 mRNA_5161 0.73 -0.1
45,419 + 13529 mRNA_5161 0.74 +1.0
45,450 - 13529 mRNA_5161 0.78 -2.5
45,846 - -1.0
46,090 - -2.1
46,193 - +1.8
46,364 - -1.4
46,457 - +0.5
46,527 + 13530 mRNA_5162 0.17 -0.5
46,587 - 13530 mRNA_5162 0.25 -2.2
46,758 + 13530 mRNA_5162 0.47 +0.2
46,777 + 13530 mRNA_5162 0.49 +0.3
46,872 + 13530 mRNA_5162 0.61 -0.1
47,053 - 13530 mRNA_5162 0.84 -0.6
47,064 + 13530 mRNA_5162 0.86 +0.1
47,066 - 13530 mRNA_5162 0.86 +1.5
47,502 - +0.3
47,571 + -0.3
47,646 - -1.6
47,740 - +0.3
47,789 - +2.4
47,798 - -0.4
47,911 - -0.9
47,944 + -1.9
47,985 - -0.8
48,125 + +0.7
48,152 - +1.7

Or see this region's nucleotide sequence