Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5203

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13570 and 13571 are separated by 383 nucleotides13571 and 13572 are separated by 401 nucleotides mRNA_5202: 13570 - K02874 RP-L14, MRPL14, rplN large subunit ribosomal protein L14, at 140,296 to 141,028 13570 mRNA_5203: 13571 - K06709 KDM4, JMJD2, JHDM3 jumonji domain-containing protein 2, at 141,412 to 145,870 13571 mRNA_5204: 13572 - Hypothetical Protein, at 146,272 to 147,091 13572

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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141,105 - +0.0
141,231 + +2.8
141,239 - +0.6
141,239 + +0.3
141,240 + -2.1
141,277 - -0.6
141,502 - -1.6
141,505 - -2.2
141,826 + +0.7
141,836 - -1.5
141,847 + -0.5
142,116 + 13571 mRNA_5203 0.16 +0.3
142,318 + 13571 mRNA_5203 0.20 +0.5
142,405 + 13571 mRNA_5203 0.22 +0.5
142,561 - 13571 mRNA_5203 0.26 +0.7
142,604 - 13571 mRNA_5203 0.27 +0.7
143,255 + 13571 mRNA_5203 0.41 +0.6
143,263 + 13571 mRNA_5203 0.42 -2.4
143,309 - 13571 mRNA_5203 0.43 -1.8
143,421 + 13571 mRNA_5203 0.45 -2.5
143,457 + 13571 mRNA_5203 0.46 +1.0
143,504 + 13571 mRNA_5203 0.47 -0.2
143,529 + 13571 mRNA_5203 0.47 +0.6
143,538 - 13571 mRNA_5203 0.48 +0.4
143,723 + 13571 mRNA_5203 0.52 +2.4
143,914 + 13571 mRNA_5203 0.56 -0.1
143,983 - 13571 mRNA_5203 0.58 -1.6
144,130 + 13571 mRNA_5203 0.61 -0.8
144,153 + 13571 mRNA_5203 0.61 -0.4
144,424 + 13571 mRNA_5203 0.68 -0.3
144,584 + 13571 mRNA_5203 0.71 +0.3
145,028 + 13571 mRNA_5203 0.81 +0.8
145,050 + 13571 mRNA_5203 0.82 -1.6
145,184 - 13571 mRNA_5203 0.85 +0.2
145,322 - 13571 mRNA_5203 0.88 -0.2
145,382 - 13571 mRNA_5203 0.89 +2.3
145,437 + +1.3
145,438 - +0.1
145,444 - -1.4
145,468 - -0.3
145,477 + +0.1
145,499 - +0.2
145,499 - +0.1
145,506 + +1.3
145,520 + -0.1
145,597 + +0.1
145,602 - +1.9
145,627 + +0.4
145,637 + -0.7
145,728 - +1.5
145,739 - -2.1
145,744 - -2.0
145,753 + +0.8
145,765 - -2.5
145,779 + +0.1
145,924 - -0.7
145,924 + -1.1
145,926 - -0.8
145,935 + +0.7
145,938 - +0.6
146,057 + +0.4
146,060 - +1.9
146,075 - +0.3
146,106 + -0.6
146,273 - -0.0
146,850 - 13572 mRNA_5204 0.70 -1.4

Or see this region's nucleotide sequence