Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5303

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13671 and 13672 are separated by 286 nucleotides mRNA_5303: 13671 - K17608 STRN1_3_4 striatin 1/3/4, at 405,190 to 408,801 13671 mRNA_5304: 13672 - KOG3598 Thyroid hormone receptor-associated protein complex, subunit TRAP230, at 409,088 to 413,869 13672

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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404,267 + -1.1
404,280 - -2.7
404,286 + -2.8
404,397 - +0.5
404,401 - +0.0
404,403 - -0.9
404,420 - +0.5
404,420 + +0.2
404,505 - +0.0
404,505 - -0.0
404,525 - +0.6
404,538 + -0.6
404,539 - -0.0
404,654 - -1.8
404,654 - -0.3
404,655 - -0.8
404,666 + -0.0
404,675 + -1.1
404,814 - +0.2
404,842 - -0.0
404,868 - -1.5
404,946 - -1.0
404,986 + -0.0
405,003 + -0.7
405,114 + -0.8
406,006 + 13671 mRNA_5303 0.23 -0.9
406,233 - 13671 mRNA_5303 0.29 +0.5
406,424 - 13671 mRNA_5303 0.34 -3.2
406,574 - 13671 mRNA_5303 0.38 -0.8
406,888 - 13671 mRNA_5303 0.47 +1.3
406,912 - 13671 mRNA_5303 0.48 +0.1
406,936 + 13671 mRNA_5303 0.48 -1.3
406,986 - 13671 mRNA_5303 0.50 -1.9
406,995 - 13671 mRNA_5303 0.50 -2.2
407,008 - 13671 mRNA_5303 0.50 +1.3
407,018 - 13671 mRNA_5303 0.51 -3.0
407,584 - 13671 mRNA_5303 0.66 +1.0
407,989 + 13671 mRNA_5303 0.77 -0.3
408,060 - 13671 mRNA_5303 0.79 -2.2
408,182 - 13671 mRNA_5303 0.83 +1.0
408,485 + +0.0
408,522 + -0.4
408,525 + +0.2
408,596 + +0.4
408,806 + -2.0
408,881 - -0.3
409,158 - +0.5
409,176 + -0.2
409,330 - +1.0
409,336 + -0.2
409,363 - -1.1
409,682 + 13672 mRNA_5304 0.12 +0.2

Or see this region's nucleotide sequence