Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5384

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt mRNA_5384: 13752 - HMMPfam-RNase H-PF00075,ProSiteProfiles-RNase H domain profile.-PS50879,SUPERFAMILY--SSF53098, at 614,894 to 615,202 13752

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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613,902 - +0.3
614,024 - +0.3
614,117 + -2.6
614,135 - +0.3
614,386 - +1.1
614,714 - -1.1
614,763 - -0.3
614,772 + -0.6
614,788 - -2.3
614,884 - -1.9
614,895 + +0.3
614,932 + 13752 mRNA_5384 0.12 -2.4
615,054 - 13752 mRNA_5384 0.52 -0.4
615,067 + 13752 mRNA_5384 0.56 -0.6
615,178 - -0.6
615,219 + -1.5
615,339 - +0.7
615,354 + -0.5
615,355 + +0.3
615,358 - +0.7
615,365 + -0.2
615,367 + -1.7
615,371 + -0.3
615,379 + +1.2
615,384 + -1.5
615,389 + +1.2
615,433 - +0.7
615,515 - -0.5
615,533 + +0.3
615,533 - -2.4
615,537 - +0.1
615,541 - -3.8
615,551 - -0.1
615,552 - +0.9
615,566 - -1.0
615,675 - -1.1
615,724 - -0.9
615,751 - +0.4
615,763 + +0.7
615,816 + -0.6
615,841 - -0.4
615,853 + -1.8
615,869 - +1.4
615,935 + -2.3
615,945 + -1.9
615,949 + +1.4
615,949 + -1.6
615,955 + -2.3
615,966 - -2.3
615,990 - -1.4
616,045 + +0.6
616,064 - +0.2
616,072 - -1.1
616,079 - +0.1
616,084 + -0.0
616,092 - -1.9
616,102 - -0.3
616,103 - -0.1
616,106 - -1.1
616,113 - -0.2
616,149 - -1.6
616,153 - -1.1

Or see this region's nucleotide sequence