Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5389

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13756 and 13757 are separated by 150 nucleotides13757 and 13758 are separated by 547 nucleotides mRNA_5388: 13756 - K02931 RP-L5, MRPL5, rplE large subunit ribosomal protein L5, at 628,120 to 629,112 13756 mRNA_5389: 13757 - KOG0750 Mitochondrial solute carrier protein, at 629,263 to 631,005 13757 mRNA_5390: 13758 - K03065 PSMC3, RPT5 26S proteasome regulatory subunit T5, at 631,553 to 634,043 13758

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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629,132 - +1.6
629,133 - -0.9
629,140 - +0.4
629,167 + -1.4
629,168 + -0.2
629,181 + -0.2
629,181 + +0.3
629,270 - -2.3
629,291 - -2.0
629,294 - -2.6
629,294 - -0.8
629,305 + +0.2
629,308 - -0.1
629,311 + -0.7
629,319 - -2.1
629,320 + -1.4
629,322 + +0.4
629,322 - -0.0
629,336 + -0.7
629,341 - -2.4
629,362 + -0.0
629,367 - -2.7
629,460 - 13757 mRNA_5389 0.11 -0.5
629,515 + 13757 mRNA_5389 0.14 +0.5
629,607 - 13757 mRNA_5389 0.20 +0.3
629,621 - 13757 mRNA_5389 0.21 -1.0
629,628 - 13757 mRNA_5389 0.21 +0.1
629,758 - 13757 mRNA_5389 0.28 -1.9
629,762 + 13757 mRNA_5389 0.29 -0.4
629,900 - 13757 mRNA_5389 0.37 -1.4
629,918 + 13757 mRNA_5389 0.38 -4.8
630,046 - 13757 mRNA_5389 0.45 -1.6
630,187 - 13757 mRNA_5389 0.53 -0.7
630,368 + 13757 mRNA_5389 0.63 -1.1
630,450 - 13757 mRNA_5389 0.68 -1.3
630,690 + 13757 mRNA_5389 0.82 -0.6
631,357 + +2.0
631,465 + +0.3
631,476 - -0.4

Or see this region's nucleotide sequence