Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13762 and 13763 are separated by 73 nucleotides mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1,074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1,148 to 1,997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1 + +0.1
1 + +0.1
1 + +1.2
1 + -1.0
23 + -2.5
29 + +0.3
29 + -1.0
34 + -1.6
39 + -1.4
39 + +0.6
47 + -3.6
50 + -0.1
50 + -0.1
50 + -2.0
50 + -0.2
50 - +0.3
51 + -1.5
61 + +1.1
62 + -0.9
96 + +0.0
116 + -1.0
158 - -4.6
159 - -0.1
160 - +1.1
169 - +0.7
180 - +2.1
189 + -1.6
198 + -0.5
201 - -1.3
208 - -1.3
210 + -0.6
225 + 13762 mRNA_5394 0.11 -0.4
225 + 13762 mRNA_5394 0.11 +1.2
244 + 13762 mRNA_5394 0.13 -0.6
245 - 13762 mRNA_5394 0.13 +0.5
271 - 13762 mRNA_5394 0.16 -0.2
276 - 13762 mRNA_5394 0.16 -1.0
277 + 13762 mRNA_5394 0.16 -0.3
280 - 13762 mRNA_5394 0.17 -1.6
306 + 13762 mRNA_5394 0.19 +1.3
317 - 13762 mRNA_5394 0.21 -1.5
345 + 13762 mRNA_5394 0.23 -2.8
345 - 13762 mRNA_5394 0.23 -0.9
347 + 13762 mRNA_5394 0.24 +0.0
359 - 13762 mRNA_5394 0.25 -0.4
387 - 13762 mRNA_5394 0.28 +0.2
399 + 13762 mRNA_5394 0.29 -0.8
434 + 13762 mRNA_5394 0.33 +1.9
447 - 13762 mRNA_5394 0.34 +0.2
485 - 13762 mRNA_5394 0.38 -3.0
543 + 13762 mRNA_5394 0.44 -1.0
649 + 13762 mRNA_5394 0.55 +0.8
667 + 13762 mRNA_5394 0.57 -4.6
667 - 13762 mRNA_5394 0.57 -0.4
678 - 13762 mRNA_5394 0.58 -0.7
718 + 13762 mRNA_5394 0.63 -0.9
723 + 13762 mRNA_5394 0.63 +0.9
802 + 13762 mRNA_5394 0.71 -2.8
806 + 13762 mRNA_5394 0.72 +0.6
905 - 13762 mRNA_5394 0.82 +0.3
911 + 13762 mRNA_5394 0.83 -1.3
965 + 13762 mRNA_5394 0.88 -1.1
966 + 13762 mRNA_5394 0.89 -0.5
968 + 13762 mRNA_5394 0.89 -1.7
1,014 - -0.7
1,084 - +0.2
1,103 - -0.4
1,110 + -0.4
1,245 - 13763 mRNA_5395 0.11 -2.0
1,260 - 13763 mRNA_5395 0.13 -2.6
1,376 - 13763 mRNA_5395 0.27 -2.2
1,438 + 13763 mRNA_5395 0.34 -3.0
1,438 + 13763 mRNA_5395 0.34 -1.5
1,438 + 13763 mRNA_5395 0.34 +0.5
1,523 + 13763 mRNA_5395 0.44 -0.1
1,528 - 13763 mRNA_5395 0.45 +0.4
1,533 + 13763 mRNA_5395 0.45 +1.0
1,538 + 13763 mRNA_5395 0.46 -3.2
1,538 - 13763 mRNA_5395 0.46 +0.0
1,556 + 13763 mRNA_5395 0.48 -2.4
1,639 + 13763 mRNA_5395 0.58 -1.4
1,854 - 13763 mRNA_5395 0.83 -1.4
1,855 - 13763 mRNA_5395 0.83 -2.3
1,887 - 13763 mRNA_5395 0.87 +0.1
1,908 - 13763 mRNA_5395 0.89 +0.4
2,000 - -1.7
2,009 + -1.5

Or see this region's nucleotide sequence