Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5417

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13784 and 13785 are separated by 145 nucleotides13785 and 13786 are separated by 193 nucleotides mRNA_5416: 13784 - K04496 CTBP C-terminal binding protein, at 52,502 to 53,852 13784 mRNA_5417: 13785 - ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 53,998 to 56,725 13785 mRNA_5418: 13786 - K01502 E3.5.5.7 aliphatic nitrilase, at 56,919 to 58,432 13786

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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53,002 + 13784 mRNA_5416 0.37 -0.5
53,163 + 13784 mRNA_5416 0.49 -0.8
53,273 + 13784 mRNA_5416 0.57 +0.2
53,347 - 13784 mRNA_5416 0.63 +0.7
53,383 - 13784 mRNA_5416 0.65 +0.9
53,512 - 13784 mRNA_5416 0.75 +1.7
53,551 + 13784 mRNA_5416 0.78 +0.6
53,605 - 13784 mRNA_5416 0.82 +0.6
53,733 - -1.5
54,389 - 13785 mRNA_5417 0.14 +0.3
54,442 - 13785 mRNA_5417 0.16 -1.1
54,545 - 13785 mRNA_5417 0.20 -0.7
54,748 + 13785 mRNA_5417 0.27 +1.6
54,750 + 13785 mRNA_5417 0.28 -0.8
54,756 - 13785 mRNA_5417 0.28 +0.4
54,792 - 13785 mRNA_5417 0.29 +0.4
54,871 + 13785 mRNA_5417 0.32 -0.7
55,060 - 13785 mRNA_5417 0.39 +0.4
55,075 - 13785 mRNA_5417 0.39 -1.7
55,076 - 13785 mRNA_5417 0.40 +1.2
55,202 - 13785 mRNA_5417 0.44 +0.5
55,226 + 13785 mRNA_5417 0.45 -0.4
55,347 + 13785 mRNA_5417 0.49 -1.5
55,489 + 13785 mRNA_5417 0.55 -0.1
55,495 - 13785 mRNA_5417 0.55 +0.3
55,737 + 13785 mRNA_5417 0.64 +2.0
55,739 - 13785 mRNA_5417 0.64 -3.8
56,079 + 13785 mRNA_5417 0.76 +1.0
56,363 + 13785 mRNA_5417 0.87 -3.4
56,368 + 13785 mRNA_5417 0.87 +1.8
56,398 - 13785 mRNA_5417 0.88 -1.4
56,647 + -1.5
56,668 - -0.1
56,684 - +0.8
56,782 - -2.1
56,804 - +0.3
56,813 - -0.4
56,828 - +0.6
56,837 - -1.8
56,852 - +0.3
56,856 + +0.3
56,971 + -1.1
57,071 - 13786 mRNA_5418 0.10 +0.4
57,095 - 13786 mRNA_5418 0.12 -1.4
57,114 + 13786 mRNA_5418 0.13 -2.6
57,271 + 13786 mRNA_5418 0.23 -0.6
57,380 - 13786 mRNA_5418 0.30 +0.6
57,513 + 13786 mRNA_5418 0.39 -0.6
57,518 - 13786 mRNA_5418 0.40 -1.3
57,518 - 13786 mRNA_5418 0.40 -0.1
57,531 + 13786 mRNA_5418 0.40 -0.2
57,531 + 13786 mRNA_5418 0.40 +0.9
57,670 - 13786 mRNA_5418 0.50 +0.1
57,684 - 13786 mRNA_5418 0.51 -0.1
57,702 + 13786 mRNA_5418 0.52 +1.2

Or see this region's nucleotide sequence