Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5444

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13811 and 13812 are separated by 188 nucleotides mRNA_5443: 13811 - KOG3085 Predicted hydrolase (HAD superfamily), at 107,127 to 108,436 13811 mRNA_5444: 13812 - HMMPfam-Eukaryotic cytochrome b561-PF03188,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 108,625 to 109,612 13812

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
107,699 - 13811 mRNA_5443 0.44 -0.3
107,721 - 13811 mRNA_5443 0.45 -2.8
107,936 - 13811 mRNA_5443 0.62 -0.0
107,953 - 13811 mRNA_5443 0.63 +0.0
107,970 - 13811 mRNA_5443 0.64 +0.2
108,105 - 13811 mRNA_5443 0.75 +0.3
108,215 - 13811 mRNA_5443 0.83 -0.7
108,232 + 13811 mRNA_5443 0.84 -1.6
108,260 - 13811 mRNA_5443 0.86 -0.4
108,554 - -0.2
108,572 + -0.0
108,572 - -0.8
108,573 - -1.4
108,709 + -1.6
108,819 - 13812 mRNA_5444 0.20 +0.4
108,860 - 13812 mRNA_5444 0.24 -1.5
109,261 + 13812 mRNA_5444 0.64 +0.3
109,294 - 13812 mRNA_5444 0.68 +0.6
109,463 - 13812 mRNA_5444 0.85 -0.4
109,466 + 13812 mRNA_5444 0.85 +1.4
109,598 - +2.7
109,604 + -0.0
109,730 + +0.2
109,756 + +1.1
109,767 + +0.3
109,771 + -1.7
110,048 - -0.6
110,208 + +1.0
110,213 + -0.3
110,385 - +0.2
110,478 - +0.2
110,492 + +0.4
110,527 - +0.3
110,543 + -0.3
110,545 + -0.1
110,561 + -0.2
110,564 + +0.5
110,593 - +0.5
110,598 - -2.9
110,598 - +0.8
110,602 - -0.2

Or see this region's nucleotide sequence