Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5481

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13848 and 13849 are separated by 467 nucleotides13849 and 13850 are separated by 372 nucleotides mRNA_5480: 13848 - Hypothetical Protein, at 198,378 to 198,864 13848 mRNA_5481: 13849 - KOG2710 Rho GTPase-activating protein, at 199,332 to 200,672 13849 mRNA_5482: 13850 - Hypothetical Protein, at 201,045 to 202,061 13850

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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198,358 - -0.1
198,636 + 13848 mRNA_5480 0.53 -0.6
198,651 + 13848 mRNA_5480 0.56 +0.5
198,698 - 13848 mRNA_5480 0.66 -1.9
198,782 - 13848 mRNA_5480 0.83 -2.3
198,788 - 13848 mRNA_5480 0.84 -0.3
198,797 - 13848 mRNA_5480 0.86 +0.0
198,811 - 13848 mRNA_5480 0.89 +1.0
198,989 + -1.2
199,095 + +0.7
199,335 - +0.9
199,392 + +0.3
199,480 + 13849 mRNA_5481 0.11 +0.8
199,514 - 13849 mRNA_5481 0.14 -1.0
199,644 - 13849 mRNA_5481 0.23 -2.1
199,684 - 13849 mRNA_5481 0.26 -0.2
199,812 + 13849 mRNA_5481 0.36 +2.1
199,916 - 13849 mRNA_5481 0.44 +1.0
200,071 - 13849 mRNA_5481 0.55 +0.3
200,156 + 13849 mRNA_5481 0.61 -0.3
200,237 - 13849 mRNA_5481 0.67 +1.3
200,240 + 13849 mRNA_5481 0.68 +0.6
200,559 - -2.9
200,770 + -0.3
201,004 - +0.4
201,244 + 13850 mRNA_5482 0.20 +0.6
201,247 - 13850 mRNA_5482 0.20 -0.6

Or see this region's nucleotide sequence