Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5516

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13883 and 13884 are separated by 155 nucleotides mRNA_5515: 13883 - K02738 PSMB6 20S proteasome subunit beta 1, at 275,180 to 276,108 13883 mRNA_5516: 13884 - Hypothetical Protein, at 276,264 to 277,474 13884

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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276,177 - -0.1
276,177 - +0.6
276,199 + -2.6
276,230 - +0.1
276,331 + -1.0
276,361 - -0.5
276,382 - -0.6
276,639 + 13884 mRNA_5516 0.31 -0.5
276,906 - 13884 mRNA_5516 0.53 +1.4
276,912 - 13884 mRNA_5516 0.54 -0.5
276,920 + 13884 mRNA_5516 0.54 -0.1
277,142 + 13884 mRNA_5516 0.73 +0.9
277,210 + 13884 mRNA_5516 0.78 +0.6
277,233 - 13884 mRNA_5516 0.80 -0.5
277,357 + -0.1
277,492 + -0.6
277,514 - +0.4
277,775 - -0.3
277,933 - -0.5
278,228 + +1.0
278,232 + -0.5
278,342 + -0.2
278,352 + -2.0
278,379 - +0.8

Or see this region's nucleotide sequence