Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5631

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13998 and 13999 are separated by 428 nucleotides13999 and 14000 are separated by 388 nucleotides mRNA_5630: 13998 - HMMPfam-SUR7/PalI family-PF06687, at 549,852 to 551,893 13998 mRNA_5631: 13999 - KOG4197 FOG PPR repeat, at 552,322 to 556,680 13999 mRNA_5632: 14000 - Hypothetical Protein, at 557,069 to 557,641 14000

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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551,479 + 13998 mRNA_5630 0.80 +1.4
551,779 - -3.8
551,793 + -0.6
551,808 + -0.7
551,840 + +0.8
551,842 - +0.1
551,942 - -0.1
551,945 - -1.7
551,957 - +0.9
551,961 + +1.3
551,963 - +0.4
551,964 + -1.6
551,966 + -0.1
551,971 + +0.4
551,977 + +0.3
551,979 + +1.0
551,979 + -0.7
552,118 + -0.8
552,233 + -2.6
552,418 + -2.3
552,994 - 13999 mRNA_5631 0.15 +0.2
553,584 - 13999 mRNA_5631 0.29 -0.3
553,952 - 13999 mRNA_5631 0.37 +0.6
554,057 - 13999 mRNA_5631 0.40 -2.3
554,120 - 13999 mRNA_5631 0.41 -0.4
554,121 + 13999 mRNA_5631 0.41 -0.2
554,414 - 13999 mRNA_5631 0.48 -0.2
554,484 - 13999 mRNA_5631 0.50 -0.1
554,590 - 13999 mRNA_5631 0.52 -1.4
554,645 + 13999 mRNA_5631 0.53 -1.3
554,978 - 13999 mRNA_5631 0.61 -0.3
555,031 - 13999 mRNA_5631 0.62 -1.1
555,146 + 13999 mRNA_5631 0.65 -1.5
555,355 + 13999 mRNA_5631 0.70 -0.8
555,667 - 13999 mRNA_5631 0.77 -2.3
555,668 - 13999 mRNA_5631 0.77 +0.3
555,802 + 13999 mRNA_5631 0.80 -1.3
555,803 - 13999 mRNA_5631 0.80 -0.9
556,438 - -1.7
556,528 - -0.3
556,568 + +0.3
556,658 - -0.7
556,685 + -0.9
556,831 - -0.2
556,949 + -1.9
557,273 - 14000 mRNA_5632 0.36 +0.9
557,280 - 14000 mRNA_5632 0.37 -0.1
557,288 + 14000 mRNA_5632 0.38 -1.9
557,293 + 14000 mRNA_5632 0.39 +0.5
557,293 + 14000 mRNA_5632 0.39 +0.4
557,300 + 14000 mRNA_5632 0.40 +0.6
557,419 + 14000 mRNA_5632 0.61 +0.2
557,437 + 14000 mRNA_5632 0.64 +0.5
557,446 + 14000 mRNA_5632 0.66 +1.2

Or see this region's nucleotide sequence