Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5657

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14024 and 14025 are separated by 168 nucleotides14025 and 14026 are separated by 180 nucleotides mRNA_5656: 14024 - HMMPfam-Universal stress protein family-PF00582,PRINTS-Universal stress protein signature-PR01438,SUPERFAMILY--SSF52402, at 615,931 to 617,472 14024 mRNA_5657: 14025 - SUPERFAMILY--SSF52047, at 617,641 to 619,056 14025 mRNA_5658: 14026 - SUPERFAMILY--SSF52047, at 619,237 to 620,685 14026

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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617,583 - -2.3
617,796 - 14025 mRNA_5657 0.11 -1.4
617,890 + 14025 mRNA_5657 0.18 +1.7
618,044 - 14025 mRNA_5657 0.28 +0.3
618,150 + 14025 mRNA_5657 0.36 -2.2
618,206 + 14025 mRNA_5657 0.40 -1.7
618,478 - 14025 mRNA_5657 0.59 +0.6
618,528 + 14025 mRNA_5657 0.63 -3.1
618,684 - 14025 mRNA_5657 0.74 +0.5
618,772 - 14025 mRNA_5657 0.80 -2.2
618,817 + 14025 mRNA_5657 0.83 +1.4
618,824 + 14025 mRNA_5657 0.84 -1.3
618,960 - -0.8
618,981 + -3.8
619,012 + -0.4
619,126 + -0.0
619,373 + -0.4
619,413 + 14026 mRNA_5658 0.12 +0.3
619,863 - 14026 mRNA_5658 0.43 -0.7
619,868 - 14026 mRNA_5658 0.44 +0.8
620,046 + 14026 mRNA_5658 0.56 -0.9

Or see this region's nucleotide sequence