Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5690

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14057 and 14058 are separated by 279 nucleotides14058 and 14059 are separated by 67 nucleotides mRNA_5689: 14057 - KOG4206 Spliceosomal protein snRNP-U1A/U2B, at 698,626 to 699,781 14057 mRNA_5690: 14058 - K17710 PTCD1 pentatricopeptide repeat domain-containing protein 1, at 700,061 to 702,418 14058 mRNA_5691: 14059 - K05956 RABGGTB geranylgeranyl transferase type-2 subunit beta, at 702,486 to 703,817 14059

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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699,157 + 14057 mRNA_5689 0.46 -1.9
699,880 + -1.3
699,984 + -0.6
700,025 - -0.8
702,400 - -1.2

Or see this region's nucleotide sequence