Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5754

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14121 and 14122 are separated by 192 nucleotides mRNA_5753: 14121 - K17267 COPG coatomer subunit gamma, at 860,617 to 864,021 14121 mRNA_5754: 14122 - KOG1721 FOG Zn-finger, at 864,214 to 867,057 14122

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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864,013 - +0.7
864,202 - -0.1
864,954 + 14122 mRNA_5754 0.26 +0.0
865,084 - 14122 mRNA_5754 0.31 -0.2
865,215 + 14122 mRNA_5754 0.35 +0.1
865,988 + 14122 mRNA_5754 0.62 -1.2
866,081 - 14122 mRNA_5754 0.66 +0.8
866,245 - 14122 mRNA_5754 0.71 +0.4
866,252 + 14122 mRNA_5754 0.72 -0.2
866,334 + 14122 mRNA_5754 0.75 +0.9
866,845 - -0.7
866,970 + -1.8
866,980 + -1.7
867,005 - -0.0
867,133 + +0.1
867,164 - -1.5
867,270 - +0.2
867,301 + -0.4
867,309 + -0.4
867,310 - +0.1
867,319 - +0.8
867,324 + +1.0
867,431 - +1.1
867,454 - +3.4
867,491 - +0.9
867,505 + -0.1
867,510 - -0.2
867,518 + +0.0
867,619 - +0.4
867,630 - +0.7
867,634 + -1.2
867,635 - -0.2
867,636 - -0.0
867,637 - -0.9
867,638 + -1.0
867,641 + -0.2
867,645 + -1.3
867,647 - +0.5
867,648 - +0.5
867,650 + +0.2
867,651 - -1.1
867,653 - -0.9
867,653 - -1.9
867,655 - +0.4
867,655 - +0.0
867,656 - +0.2
867,657 + -1.3
867,662 + +1.3
867,663 + +0.2
867,663 - +0.1
867,663 + +0.6
867,663 + -1.1
867,664 - +0.3
867,664 + -0.7
867,667 - -1.7
867,668 + -0.2
867,670 + +0.8
867,671 + -1.8
867,674 + +0.0
867,675 - -0.4
867,678 + +0.0
867,691 - +0.1
867,713 + -0.1
867,722 + -1.1
867,727 - -0.5
867,731 + -0.1
867,741 - +1.2
867,741 - +0.1
867,742 + +0.9
867,742 + -2.4
867,745 + +3.2
867,746 + +0.2
867,749 + -0.4
867,750 - -1.3
867,762 - -0.2
867,766 - +2.4
867,769 + +0.8
867,880 + -0.4
867,906 + -1.0

Or see this region's nucleotide sequence