Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5795

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14162 and 14163 are separated by 295 nucleotides14163 and 14164 overlap by 20 nucleotides mRNA_5794: 14162 - K01637 E4.1.3.1, aceA isocitrate lyase, at 955,473 to 957,559 14162 mRNA_5795: 14163 - KOG4842 Protein involved in sister chromatid separation and/or segregation, at 957,855 to 959,394 14163 mRNA_5796: 14164 - BLAST Protein of unknown function DUF4598 [Xanthophyllomyce..., at 959,375 to 960,569 14164

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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956,862 + 14162 mRNA_5794 0.67 -0.4
956,899 + 14162 mRNA_5794 0.68 -1.8
957,188 - 14162 mRNA_5794 0.82 +0.2
957,604 + +0.7
957,611 - +0.6
957,653 - -2.4
957,780 - -1.7
957,780 + -0.2
957,781 + -0.2
957,872 + -1.3
957,873 - -1.2
957,913 - +1.8
957,922 + -1.4
958,050 + 14163 mRNA_5795 0.13 +0.7
958,374 + 14163 mRNA_5795 0.34 -0.1
958,534 - 14163 mRNA_5795 0.44 -1.3
958,935 + 14163 mRNA_5795 0.70 -0.3
959,260 - -1.0
959,399 + +0.1
959,657 - 14164 mRNA_5796 0.24 -0.4
959,967 - 14164 mRNA_5796 0.50 -0.4
960,321 - 14164 mRNA_5796 0.79 -0.3

Or see this region's nucleotide sequence