Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5824

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14191 and 14192 are separated by 924 nucleotides14192 and 14193 are separated by 610 nucleotides mRNA_5823: 14191 - SUPERFAMILY--SSF52047, at 1,027,877 to 1,028,999 14191 mRNA_5824: 14192 - Hypothetical Protein, at 1,029,924 to 1,031,060 14192 mRNA_5825: 14193 - Hypothetical Protein, at 1,031,671 to 1,033,379 14193

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,029,106 + +0.1
1,029,117 - +0.4
1,029,159 - +0.3
1,029,294 + -2.6
1,029,405 + -0.6
1,029,425 + -0.4
1,029,438 + +0.2
1,029,459 - -0.3
1,029,464 + +0.4
1,029,486 + -0.5
1,029,548 + -0.9
1,029,568 - -0.0
1,029,738 + -0.3
1,029,749 + +0.6
1,029,756 + -2.5
1,029,782 + -1.3
1,029,786 + +0.1
1,029,876 - -0.5
1,030,022 + +0.1
1,030,171 - 14192 mRNA_5824 0.22 +0.2
1,030,179 - 14192 mRNA_5824 0.22 -0.5
1,030,184 - 14192 mRNA_5824 0.23 +0.3
1,030,309 - 14192 mRNA_5824 0.34 -0.8
1,030,310 + 14192 mRNA_5824 0.34 +1.7
1,030,336 + 14192 mRNA_5824 0.36 -0.4
1,030,349 - 14192 mRNA_5824 0.37 -0.9
1,030,352 - 14192 mRNA_5824 0.38 +1.6
1,030,481 + 14192 mRNA_5824 0.49 +0.4
1,030,485 + 14192 mRNA_5824 0.49 +0.7
1,030,486 + 14192 mRNA_5824 0.49 -1.0
1,030,499 - 14192 mRNA_5824 0.51 -0.4
1,030,505 + 14192 mRNA_5824 0.51 +1.4
1,030,506 + 14192 mRNA_5824 0.51 -0.1
1,030,509 - 14192 mRNA_5824 0.51 -1.4
1,030,510 + 14192 mRNA_5824 0.52 -0.8
1,030,512 - 14192 mRNA_5824 0.52 +1.5
1,030,515 - 14192 mRNA_5824 0.52 +0.2
1,030,536 - 14192 mRNA_5824 0.54 -0.0
1,030,611 - 14192 mRNA_5824 0.60 -2.2
1,030,627 + 14192 mRNA_5824 0.62 +0.7
1,030,631 - 14192 mRNA_5824 0.62 -0.0
1,030,660 + 14192 mRNA_5824 0.65 -0.1
1,030,660 - 14192 mRNA_5824 0.65 +1.2
1,030,666 - 14192 mRNA_5824 0.65 -2.3
1,030,669 - 14192 mRNA_5824 0.66 +0.1
1,030,670 + 14192 mRNA_5824 0.66 +0.8
1,030,671 - 14192 mRNA_5824 0.66 +0.6
1,030,675 - 14192 mRNA_5824 0.66 -1.5
1,030,680 + 14192 mRNA_5824 0.66 +0.6
1,030,682 + 14192 mRNA_5824 0.67 -0.2
1,030,683 + 14192 mRNA_5824 0.67 +1.4
1,030,688 + 14192 mRNA_5824 0.67 -0.6
1,030,691 - 14192 mRNA_5824 0.67 -2.2
1,030,692 - 14192 mRNA_5824 0.68 +2.2
1,030,731 + 14192 mRNA_5824 0.71 -1.4
1,030,787 + 14192 mRNA_5824 0.76 -1.5
1,030,812 - 14192 mRNA_5824 0.78 -1.2
1,030,814 + 14192 mRNA_5824 0.78 +0.2
1,030,828 + 14192 mRNA_5824 0.80 +0.3
1,030,833 + 14192 mRNA_5824 0.80 -0.5
1,030,837 - 14192 mRNA_5824 0.80 +1.2
1,030,846 - 14192 mRNA_5824 0.81 -1.5
1,030,868 + 14192 mRNA_5824 0.83 +0.1
1,030,945 + 14192 mRNA_5824 0.90 +0.3
1,030,956 - -0.9
1,030,967 + +0.4
1,030,978 + -1.4
1,030,983 - -0.4
1,030,992 + +0.6
1,030,994 - +0.6
1,030,997 + -1.7
1,031,007 - -1.5
1,031,008 + -1.3
1,031,008 - -0.6
1,031,009 + +0.4
1,031,011 + +0.1
1,031,013 + +1.2
1,031,014 - +0.8
1,031,014 + -0.1
1,031,017 + -1.3
1,031,020 - -0.2
1,031,022 - -0.2
1,031,032 + +0.6
1,031,032 + -0.7
1,031,035 + -0.3
1,031,038 - -2.5
1,031,041 + -0.9
1,031,048 + -0.0
1,031,049 - -0.6
1,031,050 + +0.3
1,031,056 - -0.6
1,031,058 + -1.5
1,031,068 + -0.1
1,031,069 - +0.6
1,031,072 + -0.5
1,031,073 + -1.2
1,031,142 - +1.0
1,031,178 + +0.3
1,031,186 + -0.2
1,031,198 + +0.2
1,031,204 - +0.1
1,031,216 + +0.3
1,031,338 - +0.4
1,031,353 - +1.0
1,031,467 - -0.0
1,031,468 + -2.8
1,031,502 - -1.8
1,031,575 - -0.9
1,031,576 - -1.3
1,031,580 - -1.7
1,031,582 + +0.4
1,031,584 - -0.2
1,031,606 + -0.2
1,031,607 - -0.0
1,031,630 - +1.2
1,031,634 - -1.1
1,031,641 - -2.7
1,031,650 + -0.9
1,031,680 - -0.5
1,031,701 - -2.2
1,031,702 + -0.7

Or see this region's nucleotide sequence