Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5826

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14193 and 14194 are separated by 298 nucleotides14194 and 14195 are separated by 382 nucleotides mRNA_5825: 14193 - Hypothetical Protein, at 1,031,671 to 1,033,379 14193 mRNA_5826: 14194 - SUPERFAMILY--SSF52047, at 1,033,678 to 1,034,925 14194 mRNA_5827: 14195 - K04518 pheA2 prephenate dehydratase, at 1,035,308 to 1,036,218 14195

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,033,402 - -1.6
1,033,406 + -1.5
1,033,421 - +1.8
1,034,182 - 14194 mRNA_5826 0.40 -3.1
1,034,297 + 14194 mRNA_5826 0.50 -0.1
1,034,571 + 14194 mRNA_5826 0.72 -0.1
1,034,589 - 14194 mRNA_5826 0.73 +0.2
1,034,853 - -1.4
1,035,013 + -1.5
1,035,439 - 14195 mRNA_5827 0.14 -2.7
1,035,575 - 14195 mRNA_5827 0.29 -5.5
1,035,582 - 14195 mRNA_5827 0.30 -3.3
1,035,617 - 14195 mRNA_5827 0.34 -2.2
1,035,628 + 14195 mRNA_5827 0.35 -2.2
1,035,756 + 14195 mRNA_5827 0.49 -0.3
1,035,780 + 14195 mRNA_5827 0.52 -1.7
1,035,895 + 14195 mRNA_5827 0.64 -1.3

Or see this region's nucleotide sequence