Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5852

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14219 and 14220 are separated by 203 nucleotides14220 and 14221 are separated by 125 nucleotides mRNA_5851: 14219 - SUPERFAMILY--SSF51735, at 1,084,885 to 1,085,792 14219 mRNA_5852: 14220 - K14856 SDA1, SDAD1 protein SDA1, at 1,085,996 to 1,089,150 14220 mRNA_5853: 14221 - K15378 SLC45A1_2_4 solute carrier family 45, member 1/2/4, at 1,089,276 to 1,092,744 14221

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,085,121 - 14219 mRNA_5851 0.26 +0.1
1,085,173 + 14219 mRNA_5851 0.32 +0.4
1,085,747 + +0.8
1,085,898 + -0.6
1,085,926 + +0.7
1,085,927 - -0.5
1,085,934 + +0.0
1,085,945 + -0.5
1,089,277 + -1.4
1,089,325 + +0.8
1,089,601 - -0.9
1,089,893 + 14221 mRNA_5853 0.18 -1.1
1,089,910 - 14221 mRNA_5853 0.18 -2.4
1,090,092 - 14221 mRNA_5853 0.24 -2.7

Or see this region's nucleotide sequence