Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5894

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14261 and 14262 are separated by 406 nucleotides14262 and 14263 are separated by 255 nucleotides mRNA_5893: 14261 - KOG1748 Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit, at 1,185,881 to 1,186,514 14261 mRNA_5894: 14262 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SUPERFAMILY--SSF57701, at 1,186,921 to 1,189,596 14262 mRNA_5895: 14263 - K17255 GDI1_2 Rab GDP dissociation inhibitor, at 1,189,852 to 1,191,772 14263

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,186,803 - -0.6
1,186,866 + +0.4
1,186,868 + -1.5
1,187,000 + -0.8
1,187,001 - -1.6
1,187,030 + -1.0
1,187,030 + -0.3
1,187,077 - -0.5
1,187,153 - +1.8
1,187,179 + -1.7
1,187,275 - 14262 mRNA_5894 0.13 -1.2
1,187,422 + 14262 mRNA_5894 0.19 -1.3
1,187,581 + 14262 mRNA_5894 0.25 +0.7
1,188,078 + 14262 mRNA_5894 0.43 -0.7
1,188,186 - 14262 mRNA_5894 0.47 -0.3
1,188,218 + 14262 mRNA_5894 0.48 +0.1
1,188,542 + 14262 mRNA_5894 0.61 -0.4
1,188,761 + 14262 mRNA_5894 0.69 +1.3
1,188,788 - 14262 mRNA_5894 0.70 +0.3
1,188,919 - 14262 mRNA_5894 0.75 -1.1
1,189,387 + -3.1
1,189,831 - +0.2

Or see this region's nucleotide sequence