Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6235

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14602 and 14603 are separated by 416 nucleotides14603 and 14604 are separated by 643 nucleotides mRNA_6234: 14602 - K00318 PRODH proline dehydrogenase, at 315,731 to 317,718 14602 mRNA_6235: 14603 - K17279 REEP5_6 receptor expression-enhancing protein 5/6, at 318,135 to 318,876 14603 mRNA_6236: 14604 - Hypothetical Protein, at 319,520 to 321,215 14604

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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317,601 + -0.1
317,770 - -1.5
318,737 + 14603 mRNA_6235 0.81 +1.0
319,109 - -0.5
319,263 - -1.9
319,271 + -1.9
319,272 + -0.8
319,278 + +0.2
319,281 + -1.2
319,285 - -1.9
319,289 - +0.0
319,292 + +2.0
319,294 - -1.9
319,302 + +0.3

Or see this region's nucleotide sequence