Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6254

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14621 and 14622 are separated by 401 nucleotides14622 and 14623 are separated by 174 nucleotides mRNA_6253: 14621 - HMMPfam-FR47-like protein-PF08445,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 360,247 to 361,370 14621 mRNA_6254: 14622 - K20477 RGP1 RAB6A-GEF complex partner protein 2, at 361,772 to 365,441 14622 mRNA_6255: 14623 - K01452 E3.5.1.41 chitin deacetylase, at 365,616 to 367,386 14623

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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361,459 - -1.4
361,467 + +0.3
361,475 + +0.2
361,606 - -0.6
361,606 - -0.7
361,647 + -2.6
361,753 - +2.1
361,896 + -1.3
362,056 + -2.5
362,188 + 14622 mRNA_6254 0.11 -1.2
362,343 - 14622 mRNA_6254 0.16 -0.3
362,344 + 14622 mRNA_6254 0.16 -1.4
362,650 - 14622 mRNA_6254 0.24 -3.4
363,350 - 14622 mRNA_6254 0.43 -1.8
363,515 + 14622 mRNA_6254 0.47 -3.4
363,917 - 14622 mRNA_6254 0.58 -4.6
364,034 - 14622 mRNA_6254 0.62 +0.5
364,080 - 14622 mRNA_6254 0.63 -2.8
364,220 + 14622 mRNA_6254 0.67 -2.5
364,517 + 14622 mRNA_6254 0.75 -4.0
364,640 + 14622 mRNA_6254 0.78 -1.5
364,964 + 14622 mRNA_6254 0.87 -3.2
365,122 - -1.2
365,592 - -0.3
365,837 - 14623 mRNA_6255 0.12 +0.1
366,131 + 14623 mRNA_6255 0.29 +1.2
366,274 - 14623 mRNA_6255 0.37 -0.7
366,415 + 14623 mRNA_6255 0.45 +1.2

Or see this region's nucleotide sequence