Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6317

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14684 and 14685 are separated by 338 nucleotides14685 and 14686 are separated by 487 nucleotides mRNA_6316: 14684 - Hypothetical Protein, at 531,577 to 532,542 14684 mRNA_6317: 14685 - K11649 SMARCC SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C, at 532,881 to 534,866 14685 mRNA_6318: 14686 - Hypothetical Protein, at 535,354 to 538,435 14686

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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531,943 - 14684 mRNA_6316 0.38 +0.1
531,949 - 14684 mRNA_6316 0.39 -0.6
531,965 + 14684 mRNA_6316 0.40 +0.6
531,979 + 14684 mRNA_6316 0.42 -0.2
531,985 + 14684 mRNA_6316 0.42 +0.0
531,986 + 14684 mRNA_6316 0.42 -0.1
532,074 + 14684 mRNA_6316 0.51 -1.5
532,091 + 14684 mRNA_6316 0.53 -0.7
532,101 + 14684 mRNA_6316 0.54 -0.1
532,104 - 14684 mRNA_6316 0.55 +0.9
532,105 - 14684 mRNA_6316 0.55 -0.4
532,108 - 14684 mRNA_6316 0.55 +0.0
532,109 + 14684 mRNA_6316 0.55 -1.0
532,121 + 14684 mRNA_6316 0.56 +0.7
532,126 - 14684 mRNA_6316 0.57 +0.4
532,129 + 14684 mRNA_6316 0.57 +0.3
532,172 + 14684 mRNA_6316 0.62 -2.8
532,240 - 14684 mRNA_6316 0.69 -0.1
532,251 - 14684 mRNA_6316 0.70 +0.0
532,251 - 14684 mRNA_6316 0.70 -0.0
532,288 + 14684 mRNA_6316 0.74 -0.3
532,731 - -0.1
532,740 + +0.5
532,873 - -0.2
532,878 - +1.8
532,893 + +0.9
533,578 - 14685 mRNA_6317 0.35 -2.3
534,906 + +0.2
534,916 - -0.4
534,924 - +0.5
534,925 + +0.7
534,926 + +1.6
534,936 + -0.1
535,061 + +1.3
535,211 + +1.1
535,217 + -4.7
535,489 - +0.2
535,530 + -1.1
535,828 + 14686 mRNA_6318 0.15 -2.1

Or see this region's nucleotide sequence