Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6562

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 14929 and 14930 are separated by 160 nucleotides mRNA_6561: 14929 - HMMPfam-F-box-like-PF12937,SUPERFAMILY--SSF52047, at 1,097,755 to 1,099,041 14929 mRNA_6562: 14930 - K20353 SEC16 COPII coat assembly protein SEC16, at 1,099,202 to 1,104,647 14930

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,098,279 + 14929 mRNA_6561 0.41 +0.4
1,098,289 - 14929 mRNA_6561 0.41 -1.3
1,098,318 + 14929 mRNA_6561 0.44 -0.9
1,098,322 + 14929 mRNA_6561 0.44 -0.3
1,098,455 - 14929 mRNA_6561 0.54 +1.4
1,098,603 - 14929 mRNA_6561 0.66 +0.3
1,098,608 + 14929 mRNA_6561 0.66 +0.0
1,099,150 + -2.2
1,099,167 - +3.5
1,099,250 + -2.7
1,102,760 + 14930 mRNA_6562 0.65 -1.9
1,102,826 + 14930 mRNA_6562 0.67 -2.0
1,103,433 - 14930 mRNA_6562 0.78 -1.8
1,103,832 + 14930 mRNA_6562 0.85 -2.2
1,104,421 + -0.2
1,104,539 + -1.2
1,104,797 - +0.4
1,104,852 + -0.4
1,105,012 - -0.9

Or see this region's nucleotide sequence