Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6638

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15005 and 15006 are separated by 223 nucleotides mRNA_6637: 15005 - K15711 SMARCA3, HLTF SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3, at 1,309,484 to 1,313,910 15005 mRNA_6638: 15006 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,314,134 to 1,316,580 15006

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1,313,897 + -0.3
1,314,176 - -1.0
1,314,177 - -1.4
1,314,259 - -1.6
1,314,446 + 15006 mRNA_6638 0.13 -0.5
1,314,999 - 15006 mRNA_6638 0.35 -1.6
1,315,481 + 15006 mRNA_6638 0.55 -2.2
1,315,517 + 15006 mRNA_6638 0.57 -3.5
1,315,707 + 15006 mRNA_6638 0.64 -0.6
1,316,874 - +0.0
1,316,921 - -1.6
1,317,067 - +0.9
1,317,080 + -0.7
1,317,145 + +0.8
1,317,149 + -1.3
1,317,150 - -1.7
1,317,153 + -0.5
1,317,155 + -0.1
1,317,160 + -2.4
1,317,184 + -1.3
1,317,212 - -2.7
1,317,215 - -0.8
1,317,225 - -3.3
1,317,226 - +0.3
1,317,434 - -0.4
1,317,508 + -0.5
1,317,517 - +0.1
1,317,530 + -0.3
1,317,533 - -0.2
1,317,535 + +0.1
1,317,543 + -0.5

Or see this region's nucleotide sequence