Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6725

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15093 and 15094 are separated by 386 nucleotides mRNA_6725: 15093 - K07575 K07575 PUA domain protein, at 176 to 1,349 15093 mRNA_6726: 15094 - Hypothetical Protein, at 1,736 to 3,438 15094

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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1 + -0.6
4 + -0.5
9 + -0.4
12 + +0.6
18 + +0.3
34 + -1.2
49 - -0.8
50 - -0.8
56 + +0.9
71 + -0.7
71 + -0.1
71 + +1.1
71 + -0.2
74 + -0.7
74 - +1.4
79 + -0.8
86 + -0.2
97 + +1.2
112 + -2.0
135 + -0.9
135 - +0.8
135 + +0.9
228 + -1.1
231 - -1.7
268 + +0.0
288 + -1.5
380 + 15093 mRNA_6725 0.17 -1.9
1,318 - +0.9
1,688 + +1.0
1,688 + +0.3
1,714 - +1.0
1,889 - -2.3
1,889 - +1.4
2,290 + 15094 mRNA_6726 0.33 +0.4
2,349 - 15094 mRNA_6726 0.36 -1.9

Or see this region's nucleotide sequence