Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6734

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15101 and 15102 are separated by 133 nucleotides15102 and 15103 are separated by 312 nucleotides mRNA_6733: 15101 - KOG4412 26S proteasome regulatory complex, subunit PSMD10, at 20,964 to 21,791 15101 mRNA_6734: 15102 - Hypothetical Protein, at 21,925 to 24,629 15102 mRNA_6735: 15103 - Hypothetical Protein, at 24,942 to 26,366 15103

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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21,068 - 15101 mRNA_6733 0.13 +0.1
21,083 + 15101 mRNA_6733 0.14 +0.5
21,112 + 15101 mRNA_6733 0.18 +0.3
21,192 + 15101 mRNA_6733 0.28 -1.0
21,204 - 15101 mRNA_6733 0.29 +0.6
21,226 + 15101 mRNA_6733 0.32 -1.2
21,348 - 15101 mRNA_6733 0.46 +0.3
21,502 - 15101 mRNA_6733 0.65 -0.6
21,506 - 15101 mRNA_6733 0.65 +1.7
21,934 + -2.7
22,070 + -1.9
22,246 - 15102 mRNA_6734 0.12 -1.3
22,246 + 15102 mRNA_6734 0.12 +0.5
22,363 - 15102 mRNA_6734 0.16 +0.5
22,588 + 15102 mRNA_6734 0.25 -1.0
22,729 + 15102 mRNA_6734 0.30 +0.8
22,832 + 15102 mRNA_6734 0.34 -2.3
22,938 + 15102 mRNA_6734 0.37 +1.2
23,225 + 15102 mRNA_6734 0.48 -3.5
23,635 + 15102 mRNA_6734 0.63 -0.3
23,642 + 15102 mRNA_6734 0.63 +0.8
23,867 + 15102 mRNA_6734 0.72 +0.0
23,952 - 15102 mRNA_6734 0.75 -1.4
24,244 + 15102 mRNA_6734 0.86 -1.4
24,266 - 15102 mRNA_6734 0.87 -0.7
24,529 - -0.3
24,538 + -0.9
24,673 - -0.5
24,701 - +1.0
24,701 - +0.5
24,702 + +0.3
24,709 - -0.7
24,722 - -2.4
24,746 - +1.6
24,749 - -0.9
24,799 - -1.2
24,825 - -1.1
24,826 + +0.6
24,852 - +0.1
24,855 - -1.4
24,894 - -1.1
24,908 - +0.0
24,984 + -0.2
24,994 + -0.5
25,126 - 15103 mRNA_6735 0.13 -0.3
25,144 - 15103 mRNA_6735 0.14 +1.8
25,146 - 15103 mRNA_6735 0.14 -0.5
25,148 - 15103 mRNA_6735 0.14 +0.1
25,209 + 15103 mRNA_6735 0.19 -0.3
25,286 - 15103 mRNA_6735 0.24 -0.4
25,297 + 15103 mRNA_6735 0.25 +0.3
25,313 - 15103 mRNA_6735 0.26 +0.9
25,428 - 15103 mRNA_6735 0.34 -1.1
25,445 - 15103 mRNA_6735 0.35 -1.0
25,468 + 15103 mRNA_6735 0.37 -0.6

Or see this region's nucleotide sequence