Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6744

Experiment: Sorted Low BODIPY Gate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15111 and 15112 are separated by 127 nucleotides15112 and 15113 are separated by 107 nucleotides mRNA_6743: 15111 - K06671 STAG1_2, SCC3, IRR1 cohesin complex subunit SA-1/2, at 41,896 to 46,673 15111 mRNA_6744: 15112 - KOG0813 Glyoxylase, at 46,801 to 48,312 15112 mRNA_6745: 15113 - HMMPfam-Uncharacterised conserved protein (DUF2315)-PF10231, at 48,420 to 49,672 15113

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
remove
46,087 - 15111 mRNA_6743 0.88 -0.5
46,122 - 15111 mRNA_6743 0.88 -1.6
46,230 - -0.1
46,423 + +0.1
46,626 - +0.6
46,636 + -2.1
46,656 - +0.3
46,684 + +0.6
46,803 + -0.4
46,901 + -1.9
47,134 + 15112 mRNA_6744 0.22 -0.7
47,248 + 15112 mRNA_6744 0.30 -1.7
47,690 + 15112 mRNA_6744 0.59 -0.3
47,696 + 15112 mRNA_6744 0.59 -1.1
47,696 + 15112 mRNA_6744 0.59 +0.3
47,961 - 15112 mRNA_6744 0.77 +1.1
47,962 - 15112 mRNA_6744 0.77 +0.9
48,087 + 15112 mRNA_6744 0.85 +0.8
48,268 - +1.9
48,279 - -0.3
48,404 + -2.8
48,417 + -1.6
48,561 - 15113 mRNA_6745 0.11 +0.6
48,562 + 15113 mRNA_6745 0.11 -0.1
48,576 + 15113 mRNA_6745 0.12 -0.3
48,762 + 15113 mRNA_6745 0.27 +0.6

Or see this region's nucleotide sequence