Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6799

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15167 and 15168 are separated by 168 nucleotides mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163,328 to 165,722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165,891 to 167,581 15168

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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162,373 + -3.1
162,379 - +1.0
162,390 + +0.3
162,834 - -1.2
162,982 - -0.2
163,131 + +0.1
164,246 - 15167 mRNA_6799 0.38 -0.9
165,778 + +0.0
165,791 - +0.0
165,791 - -0.3
165,812 - -0.9
165,824 - -1.3
165,825 - +0.1
165,825 - +0.1
165,828 + +0.1
165,910 - +0.9
166,306 + 15168 mRNA_6800 0.25 -3.2
166,574 - 15168 mRNA_6800 0.40 -1.4
166,583 + 15168 mRNA_6800 0.41 -2.2

Or see this region's nucleotide sequence