Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6800

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15167 and 15168 are separated by 168 nucleotides15168 and 15169 are separated by 878 nucleotides mRNA_6799: 15167 - K00033 PGD, gnd, gntZ 6-phosphogluconate dehydrogenase, at 163,328 to 165,722 15167 mRNA_6800: 15168 - K04709 LAG1 Acyl-CoA-dependent ceramide synthase, at 165,891 to 167,581 15168 mRNA_6801: 15169 - K15279 SLC35C1, FUCT1 solute carrier family 35 (GDP-fucose transporter), member C1, at 168,460 to 170,274 15169

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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165,778 + +0.0
165,791 - +0.0
165,791 - -0.3
165,812 - -0.9
165,824 - -1.3
165,825 - +0.1
165,825 - +0.1
165,828 + +0.1
165,910 - +0.9
166,306 + 15168 mRNA_6800 0.25 -3.2
166,574 - 15168 mRNA_6800 0.40 -1.4
166,583 + 15168 mRNA_6800 0.41 -2.2
166,857 - 15168 mRNA_6800 0.57 -3.5
167,003 - 15168 mRNA_6800 0.66 -1.5
167,045 - 15168 mRNA_6800 0.68 -3.2
167,050 + 15168 mRNA_6800 0.69 -1.8
167,231 + 15168 mRNA_6800 0.79 +1.4
167,304 - 15168 mRNA_6800 0.84 -3.6
167,305 + 15168 mRNA_6800 0.84 -1.0
167,315 + 15168 mRNA_6800 0.84 -3.4
167,339 + 15168 mRNA_6800 0.86 -2.3
167,478 + -2.6
167,606 + -1.1
167,611 + +0.2
167,614 - +0.6
167,626 - -0.3
167,731 - -0.5
167,757 - -0.6
167,763 - -1.9
167,772 + -1.0
167,795 - +0.3
167,890 + +0.2
167,891 + -0.5
167,899 - +0.2
167,900 - +0.7
167,902 + -0.9
167,946 - +0.3
167,953 - +2.5
167,960 - +0.2
167,964 - +0.2
168,029 + +0.1
168,079 - -1.6
168,080 + +0.2
168,085 - -3.7
168,086 + +0.7
168,089 - -0.7
168,089 - -0.4
168,089 - -0.7
168,090 - +0.7
168,090 - -2.0
168,090 + +0.8
168,090 - -0.5
168,091 + -0.7
168,093 + +1.3
168,097 + +0.6
168,107 + +1.2
168,116 + +1.7
168,117 - -0.7
168,117 + +0.5
168,118 - +0.2
168,123 - -0.2
168,138 + +0.8
168,141 - -0.7
168,148 + +2.1
168,149 + +0.5
168,171 + +0.0
168,174 + +0.9
168,177 - +0.3
168,181 - +0.6
168,190 - +1.4
168,190 + -0.1
168,200 - +0.2
168,203 - +0.2
168,205 - -1.6
168,212 + -0.1
168,220 - +0.3
168,224 + +0.7
168,226 - -0.4
168,228 - -2.8
168,229 - -0.1
168,229 + -0.8
168,244 + -0.1
168,244 + +0.6
168,245 - -1.2
168,247 + -0.4
168,247 + -2.9
168,249 + -0.0
168,250 - -1.1
168,279 - -0.1
168,344 - -0.2
168,360 - -0.8
168,383 + +1.1
168,385 - -0.1
168,386 - -2.0
168,505 - -1.2
168,532 - -1.4
168,542 - +0.1

Or see this region's nucleotide sequence