Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6811

Experiment: Sorted Low BODIPY Gate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 15178 and 15179 are separated by 241 nucleotides15179 and 15180 are separated by 284 nucleotides mRNA_6810: 15178 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 193,397 to 194,230 15178 mRNA_6811: 15179 - K03953 NDUFA9 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 9, at 194,472 to 196,083 15179 mRNA_6812: 15180 - K00074 paaH, hbd, fadB, mmgB 3-hydroxybutyryl-CoA dehydrogenase, at 196,368 to 197,656 15180

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Per-strain Table

Position Strand Gene Sysname Fraction Sorted Low BODIPY Gate
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193,578 + 15178 mRNA_6810 0.22 -0.6
193,584 + 15178 mRNA_6810 0.22 +0.5
193,713 + 15178 mRNA_6810 0.38 -0.0
193,719 + 15178 mRNA_6810 0.39 -1.3
194,012 - 15178 mRNA_6810 0.74 +2.0
194,116 + 15178 mRNA_6810 0.86 -0.6
194,117 - 15178 mRNA_6810 0.86 +0.1
194,146 + 15178 mRNA_6810 0.90 +0.6
194,258 + +0.0
194,302 - -1.6
194,302 + +0.9
194,393 - +1.0
194,414 - +0.3
194,422 - +0.1
194,437 + -0.9
194,451 + -0.2
194,461 + +0.7
195,957 + +2.3
196,333 - -1.1
196,502 - 15180 mRNA_6812 0.10 +0.6
196,503 + 15180 mRNA_6812 0.10 -0.6
196,512 - 15180 mRNA_6812 0.11 -0.5
196,650 + 15180 mRNA_6812 0.22 +1.3
196,861 - 15180 mRNA_6812 0.38 -0.9
196,961 + 15180 mRNA_6812 0.46 -1.0
197,023 + 15180 mRNA_6812 0.51 -0.6

Or see this region's nucleotide sequence